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  1. 1.
    SGSeq::gr
    Example genomic region of interest
    rda| rds
    GRanges
  2. 2.
    SGSeq::sgf_ann
    Example splice graph features (annotation-based)
    rda| rds
    SGFeatures
  3. 3.
    SGSeq::sgf_pred
    Example splice graph features (predicted)
    rda| rds
    SGFeatures
  4. 4.
    SGSeq::sgfc_ann
    Example splice graph feature counts (annotation-based)
    rda| rds
    SGFeatureCounts
  5. 5.
    SGSeq::sgfc_pred
    Example splice graph feature counts (predicted)
    rda| rds
    SGFeatureCounts
  6. 6.
    SGSeq::sgv_ann
    Example splice variants (annotation-based)
    rda| rds
    SGVariants
  7. 7.
    SGSeq::sgv_pred
    Example splice variants (predicted)
    rda| rds
    SGVariants
  8. 8.
    SGSeq::sgvc_ann
    Example splice variant counts (annotated)
    rda| rds
    SGVariantCounts
  9. 9.
    SGSeq::sgvc_ann_from_bam
    Example splice variant counts (annotated) from BAM files
    rda| rds
    SGVariantCounts
  10. 10.
    SGSeq::sgvc_pred
    Example splice variant counts (predicted)
    rda| rds
    SGVariantCounts
  11. 11.
    SGSeq::sgvc_pred_from_bam
    Example splice variant counts (predicted) from BAM files
    rda| rds
    SGVariantCounts
  12. 12.
    SGSeq::si
    Example sample information
    csv| xlsx| json| ndjson| rda| rds
    data.frame|8 x 6
  13. 13.
    SGSeq::tx
    Example transcripts
    rda| rds
    CompressedGRangesList
  14. 14.
    SGSeq::txf_ann
    Example transcript features (annotation-based)
    rda| rds
    TxFeatures
  15. 15.
    SGSeq::txf_pred
    Example transcript features (predicted)
    rda| rds
    TxFeatures